A while ago, it used to add the personal bonus and state the same number as CC XPs - impossible since they are different all the time:
Nevertheless, the correct XPs were added to the CC.
Perhaps they have betterworsened the display now to show only the basic points? You'd have to check how many XPs are added to your account between start of the game and end (be aware that shot XPs are added immediately).
For me, it "works": 3 holes 30 XPs, 10 shots, no CDP, 4% = 1 personal bonus XP = 41.
"41 XPs were added to your CC". (5% CC bonus should be 2 XPs)
43 XPs were added to my XPs - a "gift" of 2 showing some imperfection...
Other reason might be that your calcs do not yet include your CC participation(?)