Since the 01/08/09 update, there are 3 holes where the view of the cup is a few inches off from where the ball actually falls into the cup. Hole #'s 3,5, and 8 are the ones I have notcied so far. On #5, the place where the ball drops in is about 3 inches up the hill from where the hole is displayed. I watched 2 normal speed putts go right through the middle of where the cup is displayed with any deviation .
I can make some videos of what I am describing if you like.