Yako and 2minus, honestly when I see those putts, I completely can see reason why they didn go it.
Yako, when Charle said it breaks sharp at the hole, I knew it was Kiawah #7. That putt can happen in real life, it didn't go over the hole as the OP stated, it broke away and probably just missed the edge of the cup on the low side. Plus its momentum was pulling it away from the hole.
2minus, hard to tell since we cant see your meter, but just looks like you popped it too hard. I dont think this game has it in it but anyone ever see the first few inches to a foot of a putt in slow-mo from the side? Its often airborne. You do that right next to cup you could fly it to the back lip and bounce over.
I want to see exactly what the OP is talking about, what I am picturing is a mapping issue like the hole is there in appearance, but no in programming, so it just runs straight over it like it wasn't there, is that what the OP is talking about?